
On September 9, 2026, the Partnership for Public Service, a nonpartisan good-government group, published a brief arguing that federal workforce and funding cuts have diminished the country’s public health capacity. It used this summer’s record Cyclospora outbreak as one of its case studies. I think the argument is right. I also think several of the numbers in it, and in coverage that has already picked it up, need a clearer source before the rest of us repeat them. Below is what the brief says, why the argument holds, and five open questions I would like answered.
Cyclosporiasis is an intestinal illness caused by the parasite Cyclospora cayetanensis, most often spread in the United States through contaminated fresh produce. It causes prolonged watery diarrhea, and it is easily missed unless a laboratory specifically tests for it.
What the Partnership brief says
The brief reports that the CDC workforce in February 2026 was 26.7 percent smaller than in September 2024, and that FDA’s was 21.6 percent smaller. CDC project grant funding fell 71.9 percent from fiscal 2024 to fiscal 2025. Because about 80 percent of CDC’s domestic funding goes to state and local health departments, federal cuts become county cuts. On Cyclospora, citing CNN and NPR reporting from July, it says reductions in lab funding and in CDC parasitic-disease staff contributed to the agency’s largest outbreak reporting delay in 15 years.
There is no longer written report behind the brief. It draws on the Partnership’s interactive site, The Cost of Cutting American Science, and a longer companion page, The Unraveling of Public Science, which carries data through December 2025.
Why I think the argument is right
I used to be in the beef business with E. coli. What FSIS has done since the 1993 Jack in the Box outbreak took that practice away, thankfully. Hamburger E. coli cases, which ran from Jack in the Box to the 2002 ConAgra recall, are now near zero for my firm. That is what sustained federal inspection capacity buys, and it is the best thing to happen in food safety in my lifetime.
This summer shows the other side. CDC’s September 1 update counted 18,445 lab-confirmed, domestically acquired Cyclospora cases from May 1 through August 31, with 990 hospitalizations and two deaths in 49 states and the District of Columbia. The same stretch of 2025 produced 1,180. The federal outbreak tied to recalled iceberg lettuce stood at 11,458 in late August, which leaves roughly 7,000 confirmed cases with no food named. The two figures carry different as-of dates, so treat that gap as approximate.
The capacity problems are on the record. Dan Jernigan, who oversaw the CDC laboratory that supports the Cyclospora response until he resigned in 2025, told NPR that at least a third of the lab’s staff is missing and that his former colleagues now help states only on outbreaks that cross state lines. He also said CDC dropped Cyclospora and five other pathogens from active FoodNet tracking last year. In the same piece, Bob Custard of the West Virginia Association of Sanitarians described local food safety programs as grossly understaffed. In Lee County, Florida, a nurse practitioner at a clinic serving mainly uninsured patients told Gulf Coast News Now that the clinic was not testing anyone because patients cannot afford it. The cases it saw in its own staff and patients are in nobody’s count. The national number is a floor.
The numbers that still need answers
None of what follows undercuts the argument. It is the kind of checking that keeps a good argument from being dismissed over one figure.
1. Which food inspectors fell from 1,035 to 473? The brief says the number of federal food inspectors dropped by more than half between September 2024 and February 2026, to the lowest level since at least 2005. The figure has already been repeated in an opinion piece by the Partnership’s president, Max Stier. The Partnership’s methodology page says occupation counts cover a single four-digit OPM job code. FSIS, however, says it has more than 2,000 Food Inspectors, the official title in OPM’s 1863 series, and more than 6,500 inspectors overall. FDA had 443 food safety inspectors in 2024, according to House Oversight Committee Democrats. The 1,035 matches neither. Which code was counted, for which agencies, and does the drop reflect people leaving or positions moving into another series? FSIS lists promotion from Food Inspector to Consumer Safety Inspector, a different series, as a normal career path. USDA has also said that no plant may operate without its required inspection staff, which is the reply anyone claiming the in-plant force was cut in half will get.
2. How many people left the CDC lab that identifies parasitic outbreaks? The brief, citing CNN, says 9 of 11 staff members in 2025. Jernigan told NPR at least a third. HHS told NPR that the CDC laboratory supporting the Cyclospora response was not affected by reductions in force. All three can be true at once, because departures driven by lost USAID funding, buyouts or resignations are not layoffs. The question for HHS is simple: how many people worked in that lab in January 2025, and how many work there now?
3. Which FDA and CDC percentages are right? The brief gives 21.6 percent for FDA and 26.7 percent for CDC, measured from September 2024 to February 2026. Stier’s opinion piece gives 22.2 percent and 28.1 percent, measured from the beginning of the administration. The difference is probably the starting date or the data pull, but readers should be told which figure to use and why.
4. What counts as food and agriculture? The companion page says the workforce in its food and agriculture agencies fell by 11,529 people, or 22 percent, from September 2024 to December 2025. That group includes the Food and Nutrition Service, the Farm Service Agency and the Foreign Agricultural Service, none of which inspect food, and the methodology page adds the Natural Resources Conservation Service. It is a staffing figure for a set of USDA agencies plus FDA, not a food safety staffing figure. The same page reports that FDA’s research and development contract obligations rose 72.3 percent in fiscal 2025, which belongs in the conversation too.
5. Did communications cuts cause the confusing FDA messages? The brief says conflicting FDA statements about the outbreak source followed cuts to the agency’s communications office. The timing is documented; the cause is not. A fair question for FDA is who was writing and clearing outbreak advisories this summer compared with 2024.
What the system got right
Fairness matters here. FDA traceback reached a single lettuce supplier by mid-July, and on August 20 CDC reported that genotyping showed the parasites from sick people were genetically related, evidence that they got sick from the same source. The investigation worked well enough to name a supplier. It did not work well enough to count the sick promptly, to reach people who cannot pay for a test, or to explain roughly 7,000 confirmed cases. That is still a capacity story, and a harder one to argue with. It is also not new. GAO has carried HHS leadership and coordination of public health emergencies on its High-Risk List since 2022, and the cuts made an existing problem worse.
Questions readers are asking
Did federal cuts cause the 2026 Cyclospora outbreak? Nobody has shown that. Contamination happens on farms and in packing operations. The argument is that the cuts slowed counting, testing and response once people got sick.
How many federal food inspectors are there? It depends on who is counted. FSIS says it has more than 6,500 inspectors, and FDA had 443 food safety inspectors in 2024. The Partnership’s figure of 473 covers a single job series, and the Partnership should say which one.
Where is the full Partnership report? The September 9 brief is the full document. Its data come from the interactive site and companion page linked above.
The Partnership is on the right side of this. A good public health argument needs numbers that hold up in a hearing room and, in my line of work, in a deposition. I would like to see answers to the five questions above, and I will post them if I get them.









